3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05098

Details:

PFam ID : PF05098

PFam Domain Description : Late expression factor 4 (LEF-4)

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 46

Average sequence length: 416.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05098	Q919I1_NPVCN_2_494	69.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05098	Q0IL22_NPVLS_6_469	100

Sequence based PCA Plot of the family - PF05098 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=53 Length=8
Motif3 Start=106 Length=8
Motif4 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay