3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05096

Details:

PFam ID : PF05096

PFam Domain Description : Glutamine cyclotransferase

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 210

Average sequence length: 245

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05096	A7AVX6_BABBO_1_177	93.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05096	F0WGD8_9STRA_92_377	100

Sequence based PCA Plot of the family - PF05096 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=74 Length=8
Motif3 Start=147 Length=8
Motif4 Start=123 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay