3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05094

Details:

PFam ID : PF05094

PFam Domain Description : Late expression factor 9 (LEF-9)

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 50

Average sequence length: 239.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05094	DRE2_LEIMA_26_71	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05094	Q0ZP41_9CBAC_1_489	97.9

Sequence based PCA Plot of the family - PF05094 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=118 Length=8
Motif2 Start=95 Length=8
Motif3 Start=141 Length=8
Motif4 Start=56 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay