3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05091

Details:

PFam ID : PF05091

PFam Domain Description : Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 141

Average sequence length: 409.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05091	B4DVY1_HUMAN_2_71	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05091	D2A540_TRICA_209_427	100

Sequence based PCA Plot of the family - PF05091 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=142 Length=8
Motif3 Start=86 Length=8
Motif4 Start=181 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay