3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05090

Details:

PFam ID : PF05090

PFam Domain Description : Vitamin K-dependent gamma-carboxylase

Number of Sequence in 50% Dataset : 101

Number of Sequence in Full Dataset : 186

Average sequence length: 312.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05090	A9EGI5_9RHOB_41_273	91

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05090	C3EE13_BACTU_29_367	100

Sequence based PCA Plot of the family - PF05090 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=112 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay