3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05089

Details:

PFam ID : PF05089

PFam Domain Description : Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 161

Average sequence length: 294.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05089	E8V2F6_TERSS_146_500	88.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05089	E8V2F6_TERSS_146_500	100

Sequence based PCA Plot of the family - PF05089 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=58 Length=8
Motif2 Start=149 Length=17
Motif3 Start=93 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay