3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05088

Details:

PFam ID : PF05088

PFam Domain Description : Bacterial NAD-glutamate dehydrogenase

Number of Sequence in 50% Dataset : 100

Number of Sequence in Full Dataset : 432

Average sequence length: 1107.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05088	Q4E709_9RICK_1_509	69.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05088	C1AWZ6_RHOOB_913_1056	100

Sequence based PCA Plot of the family - PF05088 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=250 Length=8
Motif2 Start=340 Length=14
Motif3 Start=300 Length=8
Motif4 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay