3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05084

Details:

PFam ID : PF05084

PFam Domain Description : Granule antigen protein (GRA6)

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 3

Average sequence length: 136

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05084	A7X5T1_ORNAN_32_92	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05084	A4UUS6_TOXGO_1_215	100

Sequence based PCA Plot of the family - PF05084 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay