3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05071

Details:

PFam ID : PF05071

PFam Domain Description : NADH ubiquinone oxidoreductase subunit NDUFA12

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 390

Average sequence length: 103.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05071	A4HMX1_LEIBR_99_174	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05071	D8M5J7_BLAHO_43_188	100

Sequence based PCA Plot of the family - PF05071 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=33
Motif2 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay