3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05067

Details:

PFam ID : PF05067

PFam Domain Description : Manganese containing catalase

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 403

Average sequence length: 222.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05067	Q596K8_THEBO_1_285	39.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05067	Q8EQM8_OCEIH_1_157	100

Sequence based PCA Plot of the family - PF05067 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=38 Length=8
Motif2 Start=15 Length=8
Motif3 Start=29 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay