3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05066

Details:

PFam ID : PF05066

PFam Domain Description : DNA-directed RNA polymerase delta subunit

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 137

Average sequence length: 88.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05066	E8ZKD7_MYCHL_2_99	88.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05066	E8ZKD7_MYCHL_2_99	100

Sequence based PCA Plot of the family - PF05066 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=15 Length=8
Motif3 Start=62 Length=11
Motif4 Start=80 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay