3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05064

Details:

PFam ID : PF05064

PFam Domain Description : Nsp1-like C-terminal region

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 141

Average sequence length: 112.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05064	B0EG21_ENTDI_367_443	56.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05064	D2VQZ0_NAEGR_528_654	100

Sequence based PCA Plot of the family - PF05064 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=80 Length=8
Motif4 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay