3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05063

Details:

PFam ID : PF05063

PFam Domain Description : MT-A70

Number of Sequence in 50% Dataset : 84

Number of Sequence in Full Dataset : 359

Average sequence length: 156.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05063	A0BAR7_PARTE_83_221	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05063	E1FRI9_LOALO_221_409	100

Sequence based PCA Plot of the family - PF05063 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=3 Length=20
Motif2 Start=171 Length=8
Motif3 Start=181 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay