3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05058

Details:

PFam ID : PF05058

PFam Domain Description : ActA Protein

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 32

Average sequence length: 215.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05058	B9UY53_LISMO_307_607	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05058	E3Z3W9_LISIN_7_307	96.7

Sequence based PCA Plot of the family - PF05058 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay