3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05052

Details:

PFam ID : PF05052

PFam Domain Description : MerE protein

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 22

Average sequence length: 67

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05052	D8C3S8_ECOLX_1_44	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05052	Q9F4B9_9BACI_2_64	100

Sequence based PCA Plot of the family - PF05052 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=28
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay