3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05051

Details:

PFam ID : PF05051

PFam Domain Description : Cytochrome C oxidase copper chaperone (COX17)

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 117

Average sequence length: 49.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05051	Q4D7M5_TRYCR_29_66	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05051	A5DAK6_PICGU_45_93	100

Sequence based PCA Plot of the family - PF05051 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=27 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay