3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05050

Details:

PFam ID : PF05050

PFam Domain Description : Methyltransferase FkbM domain

Number of Sequence in 50% Dataset : 1026

Number of Sequence in Full Dataset : 1587

Average sequence length: 162.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05050	F2AH97_RHIET_1_56	96.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05050	E5ZGF4_CAMJE_2_107	99.7

Sequence based PCA Plot of the family - PF05050 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=256 Length=8
Motif2 Start=215 Length=8
Motif3 Start=20 Length=8
Motif4 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay