3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05049

Details:

PFam ID : PF05049

PFam Domain Description : Interferon-inducible GTPase (IIGP)

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 126

Average sequence length: 268.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05049	F0XH96_9PEZI_115_315	79.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05049	E7EYI9_DANRE_38_284	100

Sequence based PCA Plot of the family - PF05049 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=115 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay