3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05047

Details:

PFam ID : PF05047

PFam Domain Description : Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 323

Average sequence length: 55.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05047	A5E7C1_LODEL_63_110	51.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05047	Q6CD73_YARLI_22_83	98.7

Sequence based PCA Plot of the family - PF05047 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=10 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay