3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05046

Details:

PFam ID : PF05046

PFam Domain Description : Mitochondrial large subunit ribosomal protein (Img2)

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 111

Average sequence length: 83.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05046	C1GTV7_PARBA_68_139	88.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05046	Q4PGL8_USTMA_84_205	100

Sequence based PCA Plot of the family - PF05046 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=31 Length=8
Motif2 Start=2 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay