3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05044

Details:

PFam ID : PF05044

PFam Domain Description : Homeobox prospero-like protein (PROX1)

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 107

Average sequence length: 320.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05044	B7Q1X0_IXOSC_1_99	17.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05044	B2BHT6_DANRE_56_163	91.5

Sequence based PCA Plot of the family - PF05044 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=11
Motif2 Start=1 Length=8
Motif3 Start=12 Length=8
Motif4 Start=261 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay