3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05043

Details:

PFam ID : PF05043

PFam Domain Description : Mga helix-turn-helix domain

Number of Sequence in 50% Dataset : 429

Number of Sequence in Full Dataset : 915

Average sequence length: 88.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05043	A3AFL8_ORYSJ_62_102	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05043	E7MLV5_9FIRM_76_198	100

Sequence based PCA Plot of the family - PF05043 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=60 Length=8
Motif3 Start=42 Length=8
Motif4 Start=79 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay