3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05042

Details:

PFam ID : PF05042

PFam Domain Description : Caleosin related protein

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 131

Average sequence length: 154.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05042	A3AFL8_ORYSJ_62_102	57.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05042	Q9XFY1_CHLPR_8_185	100

Sequence based PCA Plot of the family - PF05042 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=98 Length=8
Motif3 Start=166 Length=8
Motif4 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay