3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05035

Details:

PFam ID : PF05035

PFam Domain Description : 2-keto-3-deoxy-galactonokinase

Number of Sequence in 50% Dataset : 79

Number of Sequence in Full Dataset : 231

Average sequence length: 275.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05035	F0G7N4_9BURK_22_81	84.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05035	Q15XG4_PSEA6_13_348	100

Sequence based PCA Plot of the family - PF05035 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=40 Length=8
Motif2 Start=28 Length=8
Motif3 Start=100 Length=11
Motif4 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay