3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05034

Details:

PFam ID : PF05034

PFam Domain Description : Methylaspartate ammonia-lyase N-terminus

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 44

Average sequence length: 152.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05034	D7FM06_ECTSI_298_441	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05034	Q2TW45_ASPOR_1_162	100

Sequence based PCA Plot of the family - PF05034 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=13 Length=8
Motif3 Start=133 Length=8
Motif4 Start=72 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay