3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05031

Details:

PFam ID : PF05031

PFam Domain Description : Iron Transport-associated domain

Number of Sequence in 50% Dataset : 96

Number of Sequence in Full Dataset : 226

Average sequence length: 120.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05031	E5V3J7_9BACL_60_229	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05031	E5V3J7_9BACL_60_229	100

Sequence based PCA Plot of the family - PF05031 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=34 Length=8
Motif2 Start=1 Length=18
Motif3 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay