3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05029

Details:

PFam ID : PF05029

PFam Domain Description : Timeless protein C terminal region

Number of Sequence in 50% Dataset : 62

Number of Sequence in Full Dataset : 118

Average sequence length: 316

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05029	A9V8H3_MONBE_772_931	72.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05029	E7FGL0_DANRE_721_1275	99.1

Sequence based PCA Plot of the family - PF05029 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=61 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay