3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05026

Details:

PFam ID : PF05026

PFam Domain Description : Dcp2, box A domain

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 118

Average sequence length: 83.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05026	B8BZG2_THAPS_9_60	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05026	D2VMY9_NAEGR_263_361	100

Sequence based PCA Plot of the family - PF05026 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=33 Length=17
Motif2 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay