3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05024

Details:

PFam ID : PF05024

PFam Domain Description : N-acetylglucosaminyl transferase component (Gpi1)

Number of Sequence in 50% Dataset : 62

Number of Sequence in Full Dataset : 148

Average sequence length: 163.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05024	Q4U8H3_THEAN_274_462	90.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05024	A5DGG4_PICGU_155_368	100

Sequence based PCA Plot of the family - PF05024 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=58 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay