3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05021

Details:

PFam ID : PF05021

PFam Domain Description : NPL4 family

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 156

Average sequence length: 260.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05021	E1ZAB2_9CHLO_348_448	73.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05021	B5VEC7_YEAS6_259_381	100

Sequence based PCA Plot of the family - PF05021 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=107 Length=8
Motif2 Start=19 Length=8
Motif3 Start=1 Length=8
Motif4 Start=203 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay