3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05020

Details:

PFam ID : PF05020

PFam Domain Description : NPL4 family, putative zinc binding region

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 89

Average sequence length: 128.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05020	A7AUE8_BABBO_160_200	64.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05020	Q8I426_PLAF7_92_251	98.8

Sequence based PCA Plot of the family - PF05020 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=8
Motif2 Start=2 Length=17
Motif3 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay