3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05019

Details:

PFam ID : PF05019

PFam Domain Description : Coenzyme Q (ubiquinone) biosynthesis protein Coq4

Number of Sequence in 50% Dataset : 75

Number of Sequence in Full Dataset : 250

Average sequence length: 193.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05019	C6HIX6_AJECH_1_103	87.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05019	C6HIX6_AJECH_1_103	100

Sequence based PCA Plot of the family - PF05019 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=145 Length=8
Motif2 Start=214 Length=22
Motif3 Start=127 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay