3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05014

Details:

PFam ID : PF05014

PFam Domain Description : Nucleoside 2-deoxyribosyltransferase

Number of Sequence in 50% Dataset : 110

Number of Sequence in Full Dataset : 384

Average sequence length: 125.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05014	A0LC83_MAGSM_28_245	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05014	YQ65_SCHPO_20_174	100

Sequence based PCA Plot of the family - PF05014 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=1 Length=17
Motif3 Start=79 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay