3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05013

Details:

PFam ID : PF05013

PFam Domain Description : Formylglycine-generating sulfatase enzyme

Number of Sequence in 50% Dataset : 95

Number of Sequence in Full Dataset : 633

Average sequence length: 214.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05013	A0LC83_MAGSM_28_245	89.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05013	A6G4X6_9DELT_33_276	100

Sequence based PCA Plot of the family - PF05013 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=185 Length=8
Motif2 Start=3 Length=14
Motif3 Start=207 Length=11
Motif4 Start=55 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay