3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05011

Details:

PFam ID : PF05011

PFam Domain Description : Lariat debranching enzyme, C-terminal domain

Number of Sequence in 50% Dataset : 70

Number of Sequence in Full Dataset : 172

Average sequence length: 127.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05011	F2QYC1_PICPA_318_454	95.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05011	D3BLD1_POLPA_189_373	100

Sequence based PCA Plot of the family - PF05011 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=12 Length=17
Motif2 Start=54 Length=8
Motif3 Start=173 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay