3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05008

Details:

PFam ID : PF05008

PFam Domain Description : Vesicle transport v-SNARE protein N-terminus

Number of Sequence in 50% Dataset : 77

Number of Sequence in Full Dataset : 192

Average sequence length: 77.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05008	D3PI25_9MAXI_11_96	23.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05008	D0N955_PHYIT_9_89	99.4

Sequence based PCA Plot of the family - PF05008 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay