3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05007

Details:

PFam ID : PF05007

PFam Domain Description : Mannosyltransferase (PIG-M)

Number of Sequence in 50% Dataset : 72

Number of Sequence in Full Dataset : 178

Average sequence length: 239.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05007	D5BAH9_ZUNPS_204_475	90.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05007	C1MLE5_MICPC_134_459	100

Sequence based PCA Plot of the family - PF05007 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=215 Length=8
Motif2 Start=293 Length=8
Motif3 Start=1 Length=8
Motif4 Start=131 Length=23

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay