3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05005

Details:

PFam ID : PF05005

PFam Domain Description : Janus/Ocnus family (Ocnus)

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 97

Average sequence length: 104.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05005	F0ZHK4_DICPU_23_139	84.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05005	Q22AM4_TETTH_11_140	100

Sequence based PCA Plot of the family - PF05005 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=5 Length=18
Motif2 Start=71 Length=8
Motif3 Start=90 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay