3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05004

Details:

PFam ID : PF05004

PFam Domain Description : Interferon-related developmental regulator (IFRD)

Number of Sequence in 50% Dataset : 70

Number of Sequence in Full Dataset : 150

Average sequence length: 276.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05004	D8TV31_VOLCA_78_255	82.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05004	E3XGD6_ANODA_1_281	100

Sequence based PCA Plot of the family - PF05004 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=43 Length=8
Motif4 Start=266 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay