3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04999

Details:

PFam ID : PF04999

PFam Domain Description : Cell division protein FtsL

Number of Sequence in 50% Dataset : 114

Number of Sequence in Full Dataset : 336

Average sequence length: 91.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04999	Q6JTY8_9MYRI_18_108	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04999	D9PJW0_9ZZZZ_19_131	100

Sequence based PCA Plot of the family - PF04999 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=17 Length=28
Motif2 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay