3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04993

Details:

PFam ID : PF04993

PFam Domain Description : TfoX N-terminal domain

Number of Sequence in 50% Dataset : 81

Number of Sequence in Full Dataset : 410

Average sequence length: 91.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04993	D6TYC8_9CHLR_28_115	72.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04993	C9Y4B6_CROTZ_11_113	100

Sequence based PCA Plot of the family - PF04993 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=24 Length=18
Motif2 Start=1 Length=8
Motif3 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay