3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04991

Details:

PFam ID : PF04991

PFam Domain Description : LicD family

Number of Sequence in 50% Dataset : 384

Number of Sequence in Full Dataset : 804

Average sequence length: 177.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04991	C5K5V4_9ALVE_96_277	92.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04991	F0H4H1_9BACT_42_90	100

Sequence based PCA Plot of the family - PF04991 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=130 Length=8
Motif2 Start=13 Length=8
Motif3 Start=25 Length=8
Motif4 Start=76 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay