3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04989

Details:

PFam ID : PF04989

PFam Domain Description : Cephalosporin hydroxylase

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 99

Average sequence length: 183.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04989	A8EXQ6_RICCK_1_70	63.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04989	Q4UKI3_RICFE_35_248	100

Sequence based PCA Plot of the family - PF04989 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=35 Length=8
Motif3 Start=24 Length=8
Motif4 Start=127 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay