3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04982

Details:

PFam ID : PF04982

PFam Domain Description : HPP family

Number of Sequence in 50% Dataset : 69

Number of Sequence in Full Dataset : 429

Average sequence length: 120.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04982	A1RXD3_THEPD_5_234	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04982	E6RFQ7_CRYGW_183_281	100

Sequence based PCA Plot of the family - PF04982 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=39

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay