3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04981

Details:

PFam ID : PF04981

PFam Domain Description : NMD3 family

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 247

Average sequence length: 208.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04981	A1RXD3_THEPD_5_234	97.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04981	Q9V009_PYRAB_4_272	100

Sequence based PCA Plot of the family - PF04981 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=235 Length=8
Motif2 Start=146 Length=8
Motif3 Start=189 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay