3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04976

Details:

PFam ID : PF04976

PFam Domain Description : DMSO reductase anchor subunit (DmsC)

Number of Sequence in 50% Dataset : 123

Number of Sequence in Full Dataset : 307

Average sequence length: 261.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04976	D0KPK4_SULS9_207_381	90.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04976	C0W5P9_9ACTO_1_323	100

Sequence based PCA Plot of the family - PF04976 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=5 Length=27
Motif2 Start=315 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay