3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04971

Details:

PFam ID : PF04971

PFam Domain Description : Lysis protein S

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 38

Average sequence length: 58.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04971	D7YQ82_ECOLX_35_62	30

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04971	D4F548_EDWTA_1_47	100

Sequence based PCA Plot of the family - PF04971 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay