3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04970

Details:

PFam ID : PF04970

PFam Domain Description : Lecithin retinol acyltransferase

Number of Sequence in 50% Dataset : 92

Number of Sequence in Full Dataset : 295

Average sequence length: 120.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04970	E3ARJ5_9SPHI_29_141	97.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04970	D4MA50_9BACT_5_160	100

Sequence based PCA Plot of the family - PF04970 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=23 Length=8
Motif3 Start=11 Length=8
Motif4 Start=142 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay