3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04969

Details:

PFam ID : PF04969

PFam Domain Description : CS domain

Number of Sequence in 50% Dataset : 375

Number of Sequence in Full Dataset : 1077

Average sequence length: 76.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04969	C1FG68_MICSR_187_267	88.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04969	Q8MPD9_TAESO_9_54	98.8

Sequence based PCA Plot of the family - PF04969 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=12 Length=8
Motif2 Start=71 Length=8
Motif3 Start=58 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay