3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04968

Details:

PFam ID : PF04968

PFam Domain Description : CHORD

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 234

Average sequence length: 62.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04968	B7FMW9_MEDTR_156_191	70

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04968	A9T7A5_PHYPA_166_233	100

Sequence based PCA Plot of the family - PF04968 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=20
Motif2 Start=44 Length=8
Motif3 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay